species:   Drmel
pid:       MI0017731
parent:    dme-mir-4945
paralog:   
locus:     NT_033777.3:11442192-11442306
matures:   ['UUUUCUCUUCUUUUUGUUGUU', 'CAACAAGCCGAAAGGAAAAAG']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NT_033777.3:11442192-11442306

0 out of bounds
13 alignments
13 proper strand
11 stranded perfect matches

                             ***********************                 ***********************                       
GUGAUGGUGCUGGUGGUGGUGCCUUCAUUGUUUUUCUCUUCUUUUUGUUGUUUGACUUUUACACUUUUGAACAACAAGCCGAAAGGAAAAAGCAUGAAGGAAUGCAAAGUAUUCG
.....(((((((....)))))))(((((..(((((((.(((..((((((((((((...........))))))))))))..))).)))))))..))))).((((((...)))))).
-------------------------------UUUUCUCUUCUUUUUGUUGUU--------------------------------------------------------------- l=21 a=7 c
-----------------------------------------------------------------------CAACAAGCCGAAAGGAAAAAG----------------------- l=21 a=0 c*
-------------------------------UUUUCUCUUCUUUUUGUUGUU--------------------------------------------------------------- l=21 a=7 ma
-----------------------------------------------------------------------CAACAAGCCGAAAGGAAAAAG----------------------- l=21 a=0 ma*

---------------------------------UUCUCUUCUUUUUGUUGUUUGA------------------------------------------------------------ l=22 a=1 
-------------------------------UUUUCUCUUCUUUUUGUUGUU--------------------------------------------------------------- l=21 a=7 (c,ma)
-------------------------------UUUUCUCUUCUUUUUGUUGUUU-------------------------------------------------------------- l=22 a=2 
-UGAUcGUGCUGGUGGUGG------------------------------------------------------------------------------------------------ l=18 a=2 
-UGAUGGUGCUGGUGGUGG------------------------------------------------------------------------------------------------ l=18 a=1 

mb-01011
ax-1011011
ku-01
ss-101111111110
fn-111
